PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028997
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 189aa    MW: 21568.6 Da    PI: 7.8045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028997genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000186385123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C + F ++  L  H++ H
  Lus10028997 63 FSCNYCRRKFYSSQALGGHQNAH 85
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-66090No hitNo description
PROSITE profilePS5015711.1366390IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MHQPDSRSDS EENEYERTNQ VASLDLSLQL LHSHNNFNES DHHHDEQSNY GESAPRTVPP  60
RVFSCNYCRR KFYSSQALGG HQNAHKRERI IAKRAVRLRV YSRYNMNLGI QAHSASHIFP  120
LQRPPLPPLD HGFGARFERN FYQEEEEVGS YWPGSFRQFA DGRPNYTTTN SVATSSSSSS  180
GLDLTLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072362.13e-38PREDICTED: zinc finger protein 4
RefseqXP_012072363.13e-38PREDICTED: zinc finger protein 4
RefseqXP_012072364.13e-38PREDICTED: zinc finger protein 4
RefseqXP_012072365.13e-38PREDICTED: zinc finger protein 4
TrEMBLA0A067KT794e-38A0A067KT79_JATCU; Uncharacterized protein
STRINGPOPTR_0010s11330.12e-36(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.16e-27zinc finger protein 7